Mosammaparast Lab

HiSeq 2990_8 Project Details:


      Analyzed: 06/20/2019

      1 Lane(s) single reads: 1 X 50 nts

      Aligned to h_sapien reference build Ensembl_R76

Sample Total Reads Read Depth Quality Mapped Reads Percent Mapped Reads Percent Mapped Quality Unique Mapped Reads Percent Unique Mapped Reads Multi Mapped Reads Percent Multi Mapped Reads Percent Unmapped Too Many Loci Percent Unmapped Too Many Mismatches Percent Unmapped Too Short Percent Unmapped Other Avg Input Length Avg Mapped Length Spliced Reads Annotated Spliced Reads Spliced GT/AG Spliced GC/AG Spliced AT/AC Noncanonical Spliced Reads Mismatch Rate Deletion Rate Avg Deletion Length Insertion Rate Avg Insertion Length Chimeric Reads Percent Chimeric Reads
sample.M_GK_Alport_23550_6 64316774 Pass 63657705 98.98 Pass 55979136 87.04 7678569 11.94 0.38 0.44 0.01 0.19 284 243.2 20530604 20139876 20299942 155227 14906 60529 0.29 0.01 2.21 0.02 2.4 0 0
sample.M_GK_Alport_24006_5 75008681 Pass 74318347 99.08 Pass 66413546 88.54 7904801 10.54 0.28 0.42 0.01 0.21 285 254.96 23897075 23400847 23626092 187410 17211 66362 0.24 0.01 2.12 0.01 2.11 0 0
sample.M_GK_Cd2ap_KO_18837_6 67904449 Pass 67309975 99.12 Pass 59881240 88.18 7428735 10.94 0.23 0.45 0.01 0.18 285 256.97 25714705 25295620 25428414 190880 18057 77354 0.32 0.02 2.44 0.02 2.81 0 0
sample.M_GK_Cd2ap_KO_23371_2 75048547 Pass 74496767 99.27 Pass 66702855 88.88 7793912 10.39 0.21 0.33 0.01 0.19 286 262.25 29705314 29213765 29392331 218847 20400 73736 0.24 0.01 2.13 0.01 2.34 0 0
sample.M_GK_Cd2ap_KO_23371_5 70871004 Pass 70331740 99.24 Pass 62896487 88.75 7435253 10.49 0.22 0.35 0.01 0.18 285 257.67 26537926 26085846 26253395 194790 18048 71693 0.27 0.01 2.21 0.02 2.52 0 0
sample.M_GK_KOSLA_KO_23593_3 68944235 Pass 68315723 99.09 Pass 61024274 88.51 7291449 10.58 0.3 0.33 0.02 0.27 284 257.48 17630882 17236734 17401161 134611 11714 83396 0.29 0.02 2.52 0.02 2.47 0 0
sample.M_GK_KOSLA_KO_23595_1 50084006 Pass 49659700 99.15 2011/04/25 44120777 88.09 5538923 11.06 0.29 0.30 0.02 0.24 283 251.73 14216434 13906878 14026811 113130 10230 66263 0.28 0.02 2.52 0.02 2.4 0 0
sample.M_GK_KOSLA_WT_23595_4 61868581 Pass 61121964 98.8 Pass 53564105 86.58 7557859 12.22 0.41 0.32 0.01 0.46 285 251.7 21775235 21276793 21276793 184463 15240 132079 0.35 0.02 0.02 0.02 2.48 0 0
sample.M_GK_WT_23830_9 63779284 Pass 63102888 98.94 Pass 55187946 86.53 7914942 12.41 0.21 0.69 0.01 0.15 284 248.47 21554470 21106561 21262804 190360 15400 85906 0.49 0.03 2.92 0.04 3.27 0 0
sample.M_GK_WT_23831_10 65021486 Pass 64014215 98.45 Pass 56263690 86.53 7750525 11.92 0.48 0.32 0.01 0.73 284 254.01 24268745 23638662 23861755 203280 17518 186192 0.33 0.02 2.44 0.02 2.24 0 0
Sample Features.Detected Total.Counts Features.greater.than.5.CPM Features.greater.than.50.CPM Features.greater.than.100.CPM Ribosomal.Features.Detected Ribosomal.Total.Counts Ribosomal.Fraction Ribosomal.Features.greater.than.5.CPM Ribosomal.Features.greater.than.50.CPM Ribosomal.Features.greater.than.100.CPM
sample.M_GK_Alport_23550_6 27280 30109192 12836 4330 1993 111 1727929 0.0573887535739916 26 4 4
sample.M_GK_Alport_24006_5 26711 33311818 12752 4411 2021 113 1669809 0.050126624731199 26 4 4
sample.M_GK_Cd2ap_KO_18837_6 26711 33311818 12752 4411 2021 113 1669809 0.050126624731199 26 4 4
sample.M_GK_Cd2ap_KO_23371_2 26663 38211313 12608 4427 2042 116 2240148 0.0586252558241063 21 4 4
sample.M_GK_Cd2ap_KO_23371_5 26773 35363992 12734 4373 1980 112 2220118 0.0627790550342846 21 4 4
sample.M_GK_KOSLA_KO_23593_3 27183 26383889 13037 4336 1927 119 1612378 0.0611122188999506 37 4 4
sample.M_GK_KOSLA_KO_23595_1 26493 20658777 12949 99.15 2055 44120777 88.09 0.0525303119347288 11.06 4 4
sample.M_GK_KOSLA_WT_23595_4 29766 30999093 12387 4137 1945 132 2222044 0.0716809359551262 17 4 4
sample.M_GK_WT_23830_9 26511 31738085 12342 4034 1821 106 2211153 0.0696687591579643 15 4 4
sample.M_GK_WT_23831_10 30858 33268720 12525 4214 1960 122 2295971 0.0690129046143044 13 4 4
Sample Features.Detected Total.Counts Features.greater.than.5.CPM Features.greater.than.50.CPM Features.greater.than.100.CPM
sample.M_GK_Alport_23550_6 48991 10821987.4970489 17846 4230 1941
sample.M_GK_Alport_24006_5 50070 13531547.8923394 17959 4253 2030
sample.M_GK_Cd2ap_KO_18837_6 49666 13440015.2136905 17759 4313 1964
sample.M_GK_Cd2ap_KO_23371_2 51245 17092328.2648094 17740 4271 1978
sample.M_GK_Cd2ap_KO_23371_5 50667 14568856.8309889 17925 4214 1929
sample.M_GK_KOSLA_KO_23593_3 49810 9860666.08229841 19304 4110 1806
sample.M_GK_KOSLA_KO_23595_1 47813 7387891.1357028 18983 4345 1966
sample.M_GK_KOSLA_WT_23595_4 48877 11583400.1676355 16803 4092 1909
sample.M_GK_WT_23830_9 48091 11411271.5056075 17102 4219 1947
sample.M_GK_WT_23831_10 50352 12844795.3415866 16859 4161 1925
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First name Last name Position Office Age Start date Salary Extn. E-mail
Tiger Nixon System Architect Edinburgh 61 2011/04/25 $320,800 5421 t.nixon@datatables.net
Garrett Winters Accountant Tokyo 63 2011/07/25 $170,750 8422 g.winters@datatables.net
Ashton Cox Junior Technical Author San Francisco 66 2009/01/12 $86,000 1562 a.cox@datatables.net
Cedric Kelly Senior Javascript Developer Edinburgh 22 2012/03/29 $433,060 6224 c.kelly@datatables.net
Airi Satou Accountant Tokyo 33 2008/11/28 $162,700 5407 a.satou@datatables.net
Brielle Williamson Integration Specialist New York 61 2012/12/02 $372,000 4804 b.williamson@datatables.net
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First name Last name Position Office Age Start date Salary Extn. E-mail
Tiger Nixon System Architect Edinburgh 61 2011/04/25 $320,800 5421 t.nixon@datatables.net
Garrett Winters Accountant Tokyo 63 2011/07/25 $170,750 8422 g.winters@datatables.net
Ashton Cox Junior Technical Author San Francisco 66 2009/01/12 $86,000 1562 a.cox@datatables.net
Cedric Kelly Senior Javascript Developer Edinburgh 22 2012/03/29 $433,060 6224 c.kelly@datatables.net
Airi Satou Accountant Tokyo 33 2008/11/28 $162,700 5407 a.satou@datatables.net
Brielle Williamson Integration Specialist New York 61 2012/12/02 $372,000 4804 b.williamson@datatables.net
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